PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012114-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 449aa    MW: 49322 Da    PI: 8.4604
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012114-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-113763127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C+++ rtG C++G++C+F+H+p
  WALNUT_00012114-RA 37 PGEPDCSYYIRTGLCRFGATCRFNHPP 63
                        5789*********************97 PP

2zf-CCCH32.31.7e-10110129827
                         GGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                         ++++tGtCk+G++CkF+H++
  WALNUT_00012114-RA 110 YYLKTGTCKFGATCKFHHPR 129
                         9*****************96 PP

3zf-CCCH37.83.2e-12151175327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C++++rtG+Ck+G++CkF+H++
  WALNUT_00012114-RA 151 EAQCSYYLRTGQCKFGSTCKFHHPQ 175
                         578********************97 PP

4zf-CCCH37.83.1e-12310336127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+f+++tG Ck+G+ C+F+H++
  WALNUT_00012114-RA 310 PGQPECQFYMKTGDCKFGAVCRFHHPR 336
                         5789*********************96 PP

5zf-CCCH39.78.3e-13357382227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++lC f++r+G+Ck+G++CkF H++
  WALNUT_00012114-RA 357 GEPLCIFYSRYGICKFGPSCKFDHPM 382
                         789*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5873664IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-53663IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-83863IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-54164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-44262IPR000571Zinc finger, CCCH-type
SMARTSM003560.022102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.427106130IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-8110129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554148176IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6149176IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-10151175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4154174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596309337IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6309336IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9311336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5313339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5315337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389355383IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6355382IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10357382IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5358382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4360380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MVVYAMYLFI NLISDAMWQM NLISSEMMDS GLYPERPGEP DCSYYIRTGL CRFGATCRFN  60
HPPNRKLAIA TARMKGDFPE RVGQPECQAW DVRYSIFLVQ FGQLIYCFDY YLKTGTCKFG  120
ATCKFHHPRD KAGVAGRVTL NILGYPLRPN EAQCSYYLRT GQCKFGSTCK FHHPQPTNMM  180
VSLSGSPVYP TMQSPTTPGQ QSYPGGISNW SRASFIPSPR WQGPSSYAPL LLPQGVVSVP  240
GWNAYSGELG SVSSPETQQQ TVGNSQIYGT SRQGESANAG PQGTFSPLRS SSVPAGFYAL  300
QGENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERLI PTPDCVLSPL GLPLRQGEPL  360
CIFYSRYGIC KFGPSCKFDH PMGIFTYNLS ASSSGDAPVR RLLGSSSGTA ALNLSSEGLV  420
QAGSAKPRRL SLSETRQMPS GDDNIDTEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218439.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLB9RFV80.0B9RFV8_RICCO; Nucleic acid binding protein, putative
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-178zinc finger protein 1